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Peer Reviewed Journal
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Authors
Lycknert, Kristina,Helander, Anne,Oscarson, Stefan,Kenne, Lennart,Widmalm, Goeran;
Year
2004
Month
Journal
Title
A conformational study of a-D-Manp-(1->2)-a-D-Manp-(1->O)-L-Ser by NMR 1H,1H T-ROESY experiments and molecular-dynamics simulations
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Published
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Volume
339
Issue
7
Start Page
1331
End Page
1338
Abstract
The conformational preference of a-D-Manp-(1->2)-a-D-Manp-(1->O)-L-Ser has been investigated by one-dimensional 1H,1H T-ROESY expts. and mol.-dynamics simulations with CHARMM22 type of force fields and water as explicit solvent. Proton-proton distances were obtained from the simulations and subsequently exptl. detd. distances could be derived. Measurements were performed on the title compd. as well as on selectively deuterium-substituted analogs synthesized as part of this study to alleviate possible NMR spectroscopic difficulties. A very good agreement was present between the sep. NMR expts. In the subsequent anal. a key nuclear Overhauser effect between the anomeric protons in the two sugar residues was used to assess the conformational dynamics revealed by the mol. simulations. The combined results support a model in which two states are significantly populated as a result of flexibility around the bond defined by the glycosidic torsion angle y. [on SciFinder (R)]
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